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Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST045378
species:
Oryza sativa
source:
microPC, original name:
miR171
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGAGCCGTGCCAATATCAC
miRNA*
GATGTTGGCATGGTTCAATC
mismatches:
2
bulges:
0
View larger
pre-miRNA
GATGTTGGCATGGTTCAATC
AAACCGGGCAAACTTATGCACTAGCTAAGCAAGATGCAGGGATATGCAGTATGGTTTTGTTTGGTCTGA
TTGAGCCGTGC
CAATATCAC
dot-bracket secondary structure
((((((((((((((((((((
(.((((((((((.((((((....((...))....((((......)))))))))).)))))))))).)))
)))))))))))
)))))))..
SIMILARITIES
miRBase
osa-MIR171f
:
3e-57
PMRD
osa-miRf10461-akr
:
3e-57
microPC
miR171
:
3e-57
UniProt
no hits
RFAM
MIR171_1: 4e-56
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
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